Escapes from herbivory in relation to the structure of mangrove island macroalgal communities

Summary Some shallow habitats that surround mangrove islands exhibit abruptly discontinuous macrophyte boundaries; in other regions, plant distributional patterns are less defined. Where distinct boundaries do occur, fleshy algae predominate on the roots of the red mangrove, Rhizophora mangle, which do not contact the bottom sediments (hanging roots), while calcifying algae dominate on the substratum-penetrating roots and banks (=embedded-root habitat) surrounding the mangrove thickets. Considerable natural-history and floristic information reveals that the fleshy hanging-root species are not specialists, for that type of habitat. Experimental transplants showed that on banks and embedded roots where there typically are abundant macroherbivores (particularly sea urchins), most fleshy algae are eliminated.The dominants of the hanging-root habitat (e.g, Acanthophora spicifera, Spyridia filamentosa, Caulerpa racemosa var. Occidentalis) are 6–20 times more susceptible to herbivores than the dominants of the embedded-root habitat (e.g., Halimeda opuntia f. triloba, H. monile). Consequently, we suggest the former are relegated to the spatial refugia from herbivores (=non-coexistence escapes) provided by the hanging roots. Factors associated with these palatability differences include higher average calorific values (6.5 times) of the fleshy hanging-root dominants, greater proportions of organic content (2.6 times) and the general absence of calcification. The dominants of the embedded-root habitat show reduced edibility as a probable consequence of low calorific values, heavy calcification and potential herbivore-detering secondary metabolites. Correlative evidence and preliminary experimental results tentatively indicate that, in the absence of macroherbivores, the hanging-root dominants, which exhibit production rates 4.7 times greater than the dominants of the embedded-root habitat, are better competitors for space.We suggest that variations in herbivory are responsible, in part, for maintaining greater algal diversity in mangrove systems. At a study site with abundant sea urchins, five algal species were found only in the embedded-root habitat three species were confined to the hanging roots, while three others occurred in both. At an urchin-free site, no macrophytes were found only on embedded-root substrata, while one (in trace amounts) was found only on hanging-root habitat and eight occurred in both. We predict that in the absence of herbivores, the species assemblage characteristic of the hanging-roots would exclude many of the dominants from the embedded-root habitat.     

Identification of an Epstein-Barr virus-coded thymidine kinase.

We have demonstrated the presence of an Epstein-Barr virus (EBV)-coded thymidine kinase (TK) by producing biochemically transformed, TK-positive mammalian cell lines using either microinjection of whole EBV virions or calcium phosphate-mediated transfection of the SalI-B restriction endonuclease fragment of EBV DNA. Analysis of these cell lines showed that: (i) EBV DNA was present in the cell lines, (ii) sequences from the SalI-B restriction endonuclease fragment of EBV were expressed, (iii) a TK activity was present and (iv) a protein with antigenic cross-reactivity with the herpes simplex virus (HSV) TK was produced. The identity of the EBV TK gene was determined by demonstrating that a recombinant plasmid, which expressed the protein product of the BXLF1 open reading frame as a fusion protein, could complement TK- strains of E. coli. A comparison of the predicted amino acid sequences of the TK proteins of EBV and HSV-1 revealed significant regions of homology.     

Erratum

Neurotransmitter receptor trafficking and the regulation of synaptic strength. Traffic 2001:2(7):437–448.     

The structural basis for recognition of base J containing DNA by a novel DNA binding domain in JBP1

The J-binding protein 1 (JBP1) is essential for biosynthesis and maintenance of DNA base-J (β-d-glucosyl-hydroxymethyluracil). Base-J and JBP1 are confined to some pathogenic protozoa and are absent from higher eukaryotes, prokaryotes and viruses. We show that JBP1 recognizes J-containing DNA (J-DNA) through a 160-residue domain, DB-JBP1, with 10 000-fold preference over normal DNA. The crystal structure of DB-JBP1 revealed a helix-turn-helix variant fold, a ‘helical bouquet’ with a ‘ribbon’ helix encompassing the amino acids responsible for DNA binding. Mutation of a single residue (Asp525) in the ribbon helix abrogates specificity toward J-DNA. The same mutation renders JBP1 unable to rescue the targeted deletion of endogenous JBP1 genes in Leishmania and changes its distribution in the nucleus. Based on mutational analysis and hydrogen/deuterium-exchange mass-spectrometry data, a model of JBP1 bound to J-DNA was constructed and validated by small-angle X-ray scattering data. Our results open new possibilities for targeted prevention of J-DNA recognition as a therapeutic intervention for parasitic diseases.     

Structure of human protein kinase C eta (PKCeta) C2 domain and identification of phosphorylation sites

Protein kinase C eta (PKCeta) is one of several PKC isoforms found in humans. It is a novel PKC isoform in that it is activated by diacylglycerol and anionic phospholipids but not calcium. The crystal structure of the PKCeta-C2 domain, which is thought to mediate anionic phospholipid sensing in the protein, was determined at 1.75 A resolution. The structure is similar to that of the PKC epsilon C2 domain but with significant variations at the putative lipid-binding site. Two serine residues within PKC eta were identified in vitro as potential autophosphorylation sites. In the unphosphorylated structure both serines line the putative lipid-binding site and may therefore play a role in the lipid-regulation of the kinase.     

FUNCTIONAL SIMILARITY AMONG ISOMORPHIC LIFE-HISTORY PHASES OF POLYCAVERNOSA DEBILIS (RHODOPHYTA,GRACILARIACEAE) 1

Morphologically identical but different life-history phases of the red alga Polycavernosa debilis (Forsskål) Fredericq and J. Norris showed no conspicuous differences in physiological or ecological performances. The costs and benefits of ploidy level, as measured by net photosynthesis, calorific content, structural makeup and resistance to predation, were not sufficient to result in statistically significant differences (P > 0.05 ANOA) for the various reproductive phases [haploid male or female (including cystocarps) and diploid tetrasporic]. The lack of measurable functional responses leads to two hypotheses: (1) that adaptive ecological-physiological differences between life-history phases are subtle, or (2) that predominantly genetic / reproductive factors are implicated in maintaining isomorphic life-history phases.     

Species boundaries and phylogenetic relationships within the green algal genus Codium (Bryopsidales) based on plastid DNA sequences

Despite the potential model role of the green algal genus Codium for studies of marine speciation and evolution, there have been difficulties with species delimitation and a molecular phylogenetic framework was lacking. In the present study, 74 evolutionarily significant units (ESUs) are delimited using 227 rbcL exon 1 sequences obtained from specimens collected throughout the genus' range. Several morpho-species were shown to be poorly defined, with some clearly in need of lumping and others containing pseudo-cryptic diversity. A phylogenetic hypothesis of 72 Codium ESUs is inferred from rbcL exon 1 and rps3-rpl16 sequence data using a conventional nucleotide substitution model (GTR+Gamma+I), a codon position model and a covariotide (covarion) model, and the fit of a multitude of substitution models and alignment partitioning strategies to the sequence data is reported. Molecular clock tree rooting was carried out because outgroup rooting was probably affected by phylogenetic bias. Several aspects of the evolution of morphological features of Codium are discussed and the inferred phylogenetic hypothesis is used as a framework to study the biogeography of the genus, both at a global scale and within the Indian Ocean.     

A comparison of nutrient- and light-limited photosynthesis in psammophytic versus epilithic forms of Halimeda (Caulerpales,Halimedaceae) from the Bahamas

The relative nutritional status, with respect to phosphorus (P _i ) vs. nitrogen (N) limitation, and light-limited photosynthesis (P _s ) was examined over a broad range of quantum fluxes (I) for four Halimeda species, Halimeda tuna (Ellis and Solander) Lamouroux, H. simulans Howe, H. lacrimosa Howe and H. copiosa Goreau and Graham, taken from clear, shallow, Bahamian waters. The results support the hypothesis that psammophytic forms (i.e., sand dwellers anchored by a bulbous rhizoidal system) differ in nutrient status from epilithic forms (i.e., attached to rock by inconspicuous rhizoids). Maximum photosynthetic rates (P _max) for the epilithic species H. lacrimos and H. copiosa decreased (P<0.05) following P _i enrichment, but increased (P<0.05) following N pulses. Conversely, following brief exposures to P _i , P _max in the sand-dwelling forms H. tuna and H. simulans was elevated (P<0.05). These findings suggest that shallow species of Halimeda are adapted to take advantage of episodic nutrient pulses, and that partitioning of limiting resources may occur between the various life forms. Shallow water Halimeda species appear well adapted to variable light regimes, including low light conditions. In all cases, light-saturated photosyntheses (I _k ) occurred at irradiances much lower than the ambient levels available on typical sunny days. Associated with low saturation irradiances were low light requirements for photosynthetic compensation (I _c ) and reasonably efficient use of low photon flux densities as indicated by relatively steep slopes () of the P _s vs. I curves. Of the four species, H. copiosa was the most shade adapted, with considerably higher values and considerably lower I _c , I _k and photoinhibition values.